Viral Metagenomics with v-met

Welcome to the documentation for the v-met pipeline.

Contents:

• Installation
  • Software Dependencies
  • Database Dependencies
  • Getting the Pipeline
• Usage
  • Input Preparation
  • Profile Selection
  • Mandatory Parameters
  • Setting up for HPC Job Schedulers
• Complete Parameter Reference
  • Input/output options
  • Kraken2 Options
  • BLAST options
  • Read trimming options
  • Workflow options
  • Max job request options